Experiment Overview
| Repository ID: | FR-FCM-Z2LX | Experiment name: | Kotliar and Lin et al., Single-cell profiling of Ebola infection in vivo reveals viral and host transcriptional dynamics | MIFlowCyt score: | 24.75% |
| Primary researcher: | Zainab Rahil | PI/manager: | Zainab Rahil | Uploaded by: | Zainab Rahil |
| Experiment dates: | 2020-05-20 - | Dataset uploaded: | May 2020 | Last updated: | May 2020 |
| Keywords: | [immunology] [Non human primates] | Manuscripts: | |||
| Organizations: |
Stanford University School of Medicine, Pathology, Palo Alto, CA (USA)
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| Purpose: | Evaluation of PBMCs from rhesus macaques challenged with EBOV/Kikwit | ||||
| Conclusion: | None | ||||
| Comments: | None | ||||
| Funding: | Not disclosed | ||||
| Quality control: | None | ||||
Experiment variables
| Timepoints | |
|---|---|
| · -30 | NHP13_Day-30_EBOV.fcs · NHP14_Day-30_EBOV.fcs · NHP15_Day-30_EBOV.fcs · NHP16_Day-30_EBOV.fcs · NHP17_Day-30_EBOV.fcs · NHP18_Day-30_EBOV.fcs · NHP19_Day-30_EBOV.fcs · NHP20_Day-30_EBOV.fcs · NHP21_Day-30_EBOV.fcs · NHP22_Day-30_EBOV.fcs · NHP23_Day-30_EBOV.fcs · NHP24_Day-30_EBOV.fcs |
| · -14 | NHP10_Day-14_EBOV.fcs · NHP11_Day-14_EBOV.fcs · NHP12_Day-14_EBOV.fcs · NHP13_Day-14_EBOV.fcs · NHP14_Day-14_EBOV.fcs · NHP15_Day-14_EBOV.fcs · NHP16_Day-14_EBOV.fcs · NHP17_Day-14_EBOV.fcs · NHP18_Day-14_EBOV.fcs · NHP19_Day-14_EBOV.fcs · NHP20_Day-14_EBOV.fcs · NHP21_Day-14_EBOV.fcs · NHP22_Day-14_EBOV.fcs · NHP23_Day-14_EBOV.fcs · NHP24_Day-14_EBOV.fcs · NHP7_Day-14_EBOV.fcs · NHP8_Day-14_EBOV.fcs · NHP9_Day-14_EBOV.fcs · NHPC2_Day-14_Control.fcs · NHPC3_Day-14_Control.fcs |
| · -4 | NHP10_Day-4_EBOV.fcs · NHP11_Day-4_EBOV.fcs · NHP12_Day-4_EBOV.fcs · NHP7_Day-4_EBOV.fcs · NHP8_Day-4_EBOV.fcs · NHP9_Day-4_EBOV.fcs |
| · 0 | NHP13_Day0_EBOV.fcs · NHP14_Day0_EBOV.fcs · NHP15_Day0_EBOV.fcs · NHP16_Day0_EBOV.fcs · NHP17_Day0_EBOV.fcs · NHP18_Day0_EBOV.fcs |
| · 1 | NHP13_Day1_EBOV.fcs · NHP14_Day1_EBOV.fcs · NHP15_Day1_EBOV.fcs · NHP16_Day1_EBOV.fcs · NHP17_Day1_EBOV.fcs · NHP18_Day1_EBOV.fcs |
| · 2 | NHP19_Day2_EBOV.fcs · NHP20_Day2_EBOV.fcs · NHP21_Day2_EBOV.fcs · NHP22_Day2_EBOV.fcs · NHP23_Day2_EBOV.fcs · NHP24_Day2_EBOV.fcs |
| · 3 | NHP10_Day3_EBOV.fcs · NHP11_Day3_EBOV.fcs · NHP12_Day3_EBOV.fcs · NHP13_Day3_EBOV.fcs · NHP14_Day3_EBOV.fcs · NHP15_Day3_EBOV.fcs · NHP16_Day3_EBOV.fcs · NHP17_Day3_EBOV.fcs · NHP18_Day3_EBOV.fcs · NHP7_Day3_EBOV.fcs · NHP8_Day3_EBOV.fcs · NHP9_Day3_EBOV.fcs |
| · 5 | NHP10_Day5_EBOV.fcs · NHP11_Day5_EBOV.fcs · NHP12_Day5_EBOV.fcs · NHP16_Day5_EBOV.fcs · NHP17_Day5_EBOV.fcs · NHP18_Day5_EBOV.fcs · NHP7_Day5_EBOV.fcs · NHP8_Day5_EBOV.fcs · NHP9_Day5_EBOV.fcs |
| · 6 | NHP11_Day6_EBOV.fcs · NHP22_Day6_EBOV.fcs · NHP23_Day6_EBOV.fcs · NHP24_Day6_EBOV.fcs · NHP8_Day6_EBOV.fcs |
| · 7 | NHP10_Day7_EBOV.fcs · NHP7_Day7_EBOV.fcs |
| · 8 | NHP12_Day8_EBOV.fcs · NHP9_Day8_EBOV.fcs |
| · 4 | NHP19_Day4_EBOV.fcs · NHP20_Day4_EBOV.fcs · NHP21_Day4_EBOV.fcs · NHP22_Day4_EBOV.fcs · NHP23_Day4_EBOV.fcs · NHP24_Day4_EBOV.fcs |
| · -21 | NHPC1_Day-21_Control.fcs |
| · -7 | NHPC1_Day-7_Control.fcs |
| · -2 | NHPC2_Day-2_Control.fcs · NHPC3_Day-2_Control.fcs |
| Individuals | |
|---|---|
| · NHP7 | NHP7_Day-14_EBOV.fcs · NHP7_Day-4_EBOV.fcs · NHP7_Day3_EBOV.fcs · NHP7_Day5_EBOV.fcs · NHP7_Day7_EBOV.fcs |
| · NHP8 | NHP8_Day-14_EBOV.fcs · NHP8_Day-4_EBOV.fcs · NHP8_Day3_EBOV.fcs · NHP8_Day5_EBOV.fcs · NHP8_Day6_EBOV.fcs |
| · NHP9 | NHP9_Day-14_EBOV.fcs · NHP9_Day-4_EBOV.fcs · NHP9_Day3_EBOV.fcs · NHP9_Day5_EBOV.fcs · NHP9_Day8_EBOV.fcs |
| · NHp10 | NHP10_Day-14_EBOV.fcs · NHP10_Day-4_EBOV.fcs · NHP10_Day3_EBOV.fcs · NHP10_Day5_EBOV.fcs · NHP10_Day7_EBOV.fcs |
| · NHP11 | NHP11_Day-14_EBOV.fcs · NHP11_Day-4_EBOV.fcs · NHP11_Day3_EBOV.fcs · NHP11_Day5_EBOV.fcs · NHP11_Day6_EBOV.fcs |
| · NHP12 | NHP12_Day-14_EBOV.fcs · NHP12_Day-4_EBOV.fcs · NHP12_Day3_EBOV.fcs · NHP12_Day5_EBOV.fcs · NHP12_Day8_EBOV.fcs |
| · NHP13 | NHP13_Day-14_EBOV.fcs · NHP13_Day-30_EBOV.fcs · NHP13_Day0_EBOV.fcs · NHP13_Day1_EBOV.fcs · NHP13_Day3_EBOV.fcs |
| · NHP14 | NHP14_Day-14_EBOV.fcs · NHP14_Day-30_EBOV.fcs · NHP14_Day0_EBOV.fcs · NHP14_Day1_EBOV.fcs · NHP14_Day3_EBOV.fcs |
| · NHP15 | NHP15_Day-14_EBOV.fcs · NHP15_Day-30_EBOV.fcs · NHP15_Day0_EBOV.fcs · NHP15_Day1_EBOV.fcs · NHP15_Day3_EBOV.fcs |
| · NHP16 | NHP16_Day-14_EBOV.fcs · NHP16_Day-30_EBOV.fcs · NHP16_Day0_EBOV.fcs · NHP16_Day1_EBOV.fcs · NHP16_Day3_EBOV.fcs · NHP16_Day5_EBOV.fcs |
| · NHP17 | NHP17_Day-14_EBOV.fcs · NHP17_Day-30_EBOV.fcs · NHP17_Day0_EBOV.fcs · NHP17_Day1_EBOV.fcs · NHP17_Day3_EBOV.fcs · NHP17_Day5_EBOV.fcs |
| · NHP18 | NHP18_Day-14_EBOV.fcs · NHP18_Day-30_EBOV.fcs · NHP18_Day0_EBOV.fcs · NHP18_Day1_EBOV.fcs · NHP18_Day3_EBOV.fcs · NHP18_Day5_EBOV.fcs |
| · NHP19 | NHP19_Day-14_EBOV.fcs · NHP19_Day-30_EBOV.fcs · NHP19_Day2_EBOV.fcs · NHP19_Day4_EBOV.fcs |
| · NHP20 | NHP20_Day-14_EBOV.fcs · NHP20_Day-30_EBOV.fcs · NHP20_Day2_EBOV.fcs · NHP20_Day4_EBOV.fcs |
| · NHP21 | NHP21_Day-14_EBOV.fcs · NHP21_Day-30_EBOV.fcs · NHP21_Day2_EBOV.fcs · NHP21_Day4_EBOV.fcs |
| · NHP22 | NHP22_Day-14_EBOV.fcs · NHP22_Day-30_EBOV.fcs · NHP22_Day2_EBOV.fcs · NHP22_Day4_EBOV.fcs · NHP22_Day6_EBOV.fcs |
| · NHP23 | NHP23_Day-14_EBOV.fcs · NHP23_Day-30_EBOV.fcs · NHP23_Day2_EBOV.fcs · NHP23_Day4_EBOV.fcs · NHP23_Day6_EBOV.fcs |
| · NHP24 | NHP24_Day-14_EBOV.fcs · NHP24_Day-30_EBOV.fcs · NHP24_Day2_EBOV.fcs · NHP24_Day4_EBOV.fcs · NHP24_Day6_EBOV.fcs |
| · NHPC1 | NHPC1_Day-21_Control.fcs · NHPC1_Day-7_Control.fcs |
| · NHPC2 | NHPC2_Day-14_Control.fcs · NHPC2_Day-2_Control.fcs |
| · NHPC3 | NHPC3_Day-14_Control.fcs · NHPC3_Day-2_Control.fcs |
