Notice: Temporary Suspension of New Experiment Creation
We have temporarily disabled the creation of new experiments as we are continuously running out of space. This issue has been impacting both uploads and downloads from FlowRepository. By taking this step, we aim to make downloads of existing data more reliable.
We apologize for the inconvenience and appreciate your understanding as we work on upgrading our hardware and improving the overall solution.
Thank you for your patience.

10 most popular datasets this month (based on downloads within the last month)


Experiment Name Repository ID Pubmed ID(s) Journal(s) FCS Files Illustrations Primary Researcher Project MIFlowCyt Score Updated
Immune Subsets in Healthy Donor Bone Marrow FR-FCM-ZYQ9 [30518681] 132 1 Meghali Goswami
Oct 2020
cyCombine allows for robust integration of single-cell cytometry datasets within and across technologies FR-FCM-Z52G 240 1 Christina Bligaard Pedersen
Mar 2022
Determining the role of CD4+ and CD8+ T-cells in the LST response FR-FCM-Z6UG 8 1 Jalal Alshaweesh
Oct 2023
A regulatory T cell signature distinguishes the immune landscape of COVID-19 patients from those with other respiratory infections - T cell panel FR-FCM-Z4KY 121 1 Marie FRUTOSO
Sep 2021
Predictive Biomarkers for Response to Anti-CTLA-4 and Anti-PD-1 Immunotherapy FR-FCM-ZYKP [29510697] 128 2 Priyanka Balasubrahmanyam
Apr 2019
OMIP-0XX: 40-Color Spectral Flow Cytometry Delineates All Major Leukocyte Populations in Murine Lymphoid Tissues FR-FCM-Z63E Cytalogo 6 1 Aris Kare
Feb 2023
OMIP-111: Immune-Profiling of T Helper 1 (Th1), Th2, and Th17 Signatures in Murine Splenocytes by Targeting Intracellular Cytokines FR-FCM-Z7CH [40095325] [40095325] Cytalogo 38 1 Soumik Barman
Mar 2025
Hematologist-level classification of mature B-cell neoplasm using deep learning on multiparameter flow cytometry data FR-FCM-Z2JW 7883 1 Max Zhao
Oct 2020
A 24-Marker Flow Cytometry Panel for Comprehensive Immune Profiling Using Spectral Flow Cytometry FR-FCM-Z8H9 26 1 Arun Arunachalam
Jun 2025
AML, FlowCAP-II FR-FCM-ZZYA [23396282] [24407226] Cytalogo Natmetlogo Bioinformaticslogo 2872 4 Nima Aghaeepour
Jan 2013

10 most popular datasets (based on all time downloads)


Experiment Name Repository ID Manuscript(s) Journal(s) FCS Files Illustrations Primary Researcher Project MIFlowCyt Score Updated
FCS collection for software testing FR-FCM-ZZZ4 39 3 Ryan Brinkman Community datasets
Dec 2015
AML, FlowCAP-II FR-FCM-ZZYA [23396282] [24407226] [PMC3906045] Cytalogo Natmetlogo Bioinformaticslogo 2872 4 Nima Aghaeepour Community datasets
Jan 2013
HEUvsUE, FlowCAP-II FR-FCM-ZZZU [23396282] [PMC3906045] Natmetlogo 308 4 Nima Aghaeepour Community datasets
Jan 2013
Immune profiling of different human tumors coupled with murine reverse translational studies identify CD73 as a rational combinatorial target for GBM FR-FCM-Z2B3 200 1 Andrew Cornish
Dec 2019
HIV Progression, FlowCAP IV FR-FCM-ZZ99 766 3 Nima Aghaeepour Community datasets
Jul 2015
Safety / Immunogenicity of PENNVAX-B with / without IL12 DNA plasmid via electroporation in healthy adults FR-FCM-ZZ7U [23840043] [24382714] [PMC3733506] Cytalogo Jidlogo 470 1 Greg Finak
Mar 2014
Surface Marker Flow Cytometry in human eosinophils after glucocorticoid exposure FR-FCM-ZYND [29885264] Scientificdatanaturelogo 30 1 Michelle Makiya
Jul 2018
IDCRP's HIV Natural History Study FR-FCM-ZZZK [20001854] [18667932] [22383736] [23044634] [24407226] [PMC2939466] [PMC3315712] [PMC3726344] Jidlogo Jaidslogo Bioinformaticslogo 466 2 Nima Aghaeepour
Oct 2013
Comparison of clustering methods for high-dimensional single-cell flow and mass cytometry (CyTOF) data FR-FCM-ZZPH [27992111] [31099963] Cytalogo 14 1 Lukas Weber
Dec 2016
GvHD, FlowCAP-I FR-FCM-ZZY2 [17531779] [23396282] [PMC3906045] [PMC2000975] Bbmtlogo Natmetlogo 12 3 Nima Aghaeepour Community datasets
Jan 2013